rs4207197 SNP Detail

Summary

• ID
  rs4207197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77126393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGCTGCGC GTTCATTGAA CCGAGAGGCC AGATCACCTA
  TGTGAGGCGG TGGGAACCAT ATGGAGATTT ATATTAGAAC TTCAGCAAAG TGCACAGCTG
  Y
  AGCCGGCAGA AGCCAGCTCT CGGGCTGACA GGCAAATGAA CCAGATCGTG GACGGGGCCT
  CTGGGTGGCA GCTCCGGCCT TTTGGTTGTT GGACAACTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369791	mCV25161235_74555054	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T
ss39477482	mCV25161235	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148391586	ENSMUSSNP1390423	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325255104	CHEV_16_77329750	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207197					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77126393 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	within coordinates
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139047	transcription start site region 139047	260 bp downstream
Tssr139048	transcription start site region 139048	152 bp downstream
Tssr139049	transcription start site region 139049	128 bp downstream
Tssr139050	transcription start site region 139050	within coordinates
Tssr139051	transcription start site region 139051	6 bp upstream
Tssr139052	transcription start site region 139052	37 bp upstream
Tssr139053	transcription start site region 139053	66 bp upstream
Tssr139054	transcription start site region 139054	124 bp upstream
Tssr141826	transcription start site region 141826	20 bp downstream