rs4207199 SNP Detail

Summary

• ID
  rs4207199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77126810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCTTCATT TCACGTGATA CTTGCAATCT GAGAGAAAAA
  AAAAAAACTC GTAGCGTCCA GTCTGTTCTT TCTCTTCCAG ATTTTCTTTT GTTTAAGTCC
  Y
  GCTTTTCTGC AACCAGAGTC AATATTGATT TAGGCAAATC AAATGTGGCT GGGATGAGGA
  AGAAGGGGGA GTCAGGATAT GTGTAAACAT TGCATTTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369793	mCV25161247_74555471	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss39483490	mCV25161247	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148391594	ENSMUSSNP3656296	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss325255106	CHEV_16_77330167	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207199					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77126810 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	7 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	572 bp distal
Rr518273	regulatory region 518273	318 bp distal
Rr518274	regulatory region 518274	within coordinates
Rr518275	regulatory region 518275	878 bp proximal
Tssr139047	transcription start site region 139047	677 bp downstream
Tssr139048	transcription start site region 139048	569 bp downstream
Tssr139049	transcription start site region 139049	545 bp downstream
Tssr139050	transcription start site region 139050	413 bp downstream
Tssr139051	transcription start site region 139051	397 bp downstream
Tssr139052	transcription start site region 139052	369 bp downstream
Tssr139053	transcription start site region 139053	303 bp downstream
Tssr139054	transcription start site region 139054	266 bp downstream
Tssr141826	transcription start site region 141826	371 bp upstream