rs4207200 SNP Detail

Summary

• ID
  rs4207200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77127046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTGCCTT ATCTCAGGAA TAAGTCCTAT GGAAAGAGCT
  TTGCATTCCT GGCCAGGAGA AGGGTCAGGG CCCGTGTTTA GCAGCCAGCC AGCCAGCCAG
  Y
  GAGAATTGCT GTTGCTCCCT CTTATTTTTA ATATAAAATA GTTAAGAAAG TACATCTTCA
  TGCATTGAAA ACTAAGTGTG CTTTGATTTC CCAAGTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369794	mCV25161248_74555707	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss39439381	mCV25161248	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss148391606	ENSMUSSNP6289502	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss325255108	CHEV_16_77330403	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207200					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77127046 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	243 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	808 bp distal
Rr518273	regulatory region 518273	554 bp distal
Rr518274	regulatory region 518274	within coordinates
Rr518275	regulatory region 518275	642 bp proximal
Tssr139047	transcription start site region 139047	913 bp downstream
Tssr139048	transcription start site region 139048	805 bp downstream
Tssr139049	transcription start site region 139049	781 bp downstream
Tssr139050	transcription start site region 139050	649 bp downstream
Tssr139051	transcription start site region 139051	633 bp downstream
Tssr139052	transcription start site region 139052	605 bp downstream
Tssr139053	transcription start site region 139053	539 bp downstream
Tssr139054	transcription start site region 139054	502 bp downstream
Tssr141826	transcription start site region 141826	607 bp upstream