rs4207201 SNP Detail

Summary

• ID
  rs4207201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77127741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTCTTA TTCCAACCTC
  TCATGTTCAT AATCACATTT ATAGTAAGTG CTAAAATATA CTTTCTGATG TTCACCTCAT
  TAGAAAAATC AGTTTTTGCT ACCATAATAT TTGCAATTGA TGTTATCAAA AAATATGGAG
  GATCTTTATG GTCCATTTGT TGATTTGATG AAGTTTTAGG TCTACTTCAG CATCGTTTAA
  R
  CATTTTCCAA AGCAGAGAGA CAATTCAGTT TTGTCTACTT GTTTAAAGCA CAGAACTTAC
  ATGGGGGACA GACTCCTTTT ATCTGGAATC TTCTGTTTGT TAAAGTAAAT TAATAAACCA
  AACAAAAAAC CAAACAAAAG GCAGCCAGTG AGAAGCTGCA GATTTGTAGT GAAAGGGAAG
  GGGACTTTAA GGGTGTCGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss6369795	mCV25161249_74556407	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss39453297	mCV25161249	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148391609	ENSMUSSNP5258422	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs4207201					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77127741 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	938 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	1503 bp distal
Rr518273	regulatory region 518273	1249 bp distal
Rr518274	regulatory region 518274	453 bp distal
Rr518275	regulatory region 518275	within coordinates
Tssr139047	transcription start site region 139047	1608 bp downstream
Tssr139048	transcription start site region 139048	1500 bp downstream
Tssr139049	transcription start site region 139049	1476 bp downstream
Tssr139050	transcription start site region 139050	1344 bp downstream
Tssr139051	transcription start site region 139051	1328 bp downstream
Tssr139052	transcription start site region 139052	1300 bp downstream
Tssr139053	transcription start site region 139053	1234 bp downstream
Tssr139054	transcription start site region 139054	1197 bp downstream
Tssr141826	transcription start site region 141826	1302 bp upstream