rs4207202 SNP Detail

Summary

• ID
  rs4207202
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77127790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCATTTG TTGATTTGAT GAAGTTTTAG GTCTACTTCA
  GCATCGTTTA AACATTTTCC AAAGCAGAGA GACAATTCAG TTTTGTCTAC TTGTTTAAAG
  M
  ACAGAACTTA CATGGGGGAC AGACTCCTTT TATCTGGAAT CTTCTGTTTG TTAAAGTAAA
  TTAATAAACC AAACAAAAAA CCAAACAAAA GGCAGCCAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss6369796	mCV25161259_74556456	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss39466930	mCV25161259	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss148391617	ENSMUSSNP4151838	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss325255109	CHEV_16_77331147	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs4207202					SNP	C	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77127790 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	987 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	1552 bp distal
Rr518273	regulatory region 518273	1298 bp distal
Rr518274	regulatory region 518274	502 bp distal
Rr518275	regulatory region 518275	within coordinates
Tssr139047	transcription start site region 139047	1657 bp downstream
Tssr139048	transcription start site region 139048	1549 bp downstream
Tssr139049	transcription start site region 139049	1525 bp downstream
Tssr139050	transcription start site region 139050	1393 bp downstream
Tssr139051	transcription start site region 139051	1377 bp downstream
Tssr139052	transcription start site region 139052	1349 bp downstream
Tssr139053	transcription start site region 139053	1283 bp downstream
Tssr139054	transcription start site region 139054	1246 bp downstream
Tssr141826	transcription start site region 141826	1351 bp upstream