rs4207203 SNP Detail

Summary

• ID
  rs4207203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77127981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGCCAGT GAGAAGCTGC AGATTTGTAG TGAAAGGGAA
  GGGGACTTTA AGGGTGTCGG AATGTGATTC CATTTCCGAG GTAATTTTGT AGCATTTCTT
  R
  GCTGCCTTTG CAAACTTTAT GGAAACCTGT TAACCGCTGG CAGCCCTGAG CCCTAGGTTT
  GCATTTTGAA CGGAGATTAT GCACAGGAAA GACAAGTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369797	mCV25161260_74556647	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss39434913	mCV25161260	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148391619	ENSMUSSNP6754751	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss325255110	CHEV_16_77331338	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207203					SNP	A	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77127981 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	1178 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	1743 bp distal
Rr518273	regulatory region 518273	1489 bp distal
Rr518274	regulatory region 518274	693 bp distal
Rr518275	regulatory region 518275	within coordinates
Tssr139047	transcription start site region 139047	1848 bp downstream
Tssr139048	transcription start site region 139048	1740 bp downstream
Tssr139049	transcription start site region 139049	1716 bp downstream
Tssr139050	transcription start site region 139050	1584 bp downstream
Tssr139051	transcription start site region 139051	1568 bp downstream
Tssr139052	transcription start site region 139052	1540 bp downstream
Tssr139053	transcription start site region 139053	1474 bp downstream
Tssr139054	transcription start site region 139054	1437 bp downstream
Tssr141826	transcription start site region 141826	1542 bp upstream