rs4207204 SNP Detail

Summary

• ID
  rs4207204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77128121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCCCTGA GCCCTAGGTT TGCATTTTGA ACGGAGATTA
  TGCACAGGAA AGACAAGTTC GTCCTGTCAT GTGACCTGAG CTGCCTTATC AAAGCAAAAT
  R
  TGGCAGCCGC ATTCTTTCCT GAGAGAACGA AGTTCATTAT GTCCTTGCCA CCTGTTACGT
  TCACTCTTTG TCCTTGTGGC CACACAGTTC CTGCTTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369798	mCV25161261_74556787	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A
ss39465654	mCV25161261	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148391627	ENSMUSSNP4983660	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325255111	CHEV_16_77331478	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207204					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77128121 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	1318 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	1883 bp distal
Rr518273	regulatory region 518273	1629 bp distal
Rr518274	regulatory region 518274	833 bp distal
Rr518275	regulatory region 518275	within coordinates
Tssr139047	transcription start site region 139047	1988 bp downstream
Tssr139048	transcription start site region 139048	1880 bp downstream
Tssr139049	transcription start site region 139049	1856 bp downstream
Tssr139050	transcription start site region 139050	1724 bp downstream
Tssr139051	transcription start site region 139051	1708 bp downstream
Tssr139052	transcription start site region 139052	1680 bp downstream
Tssr139053	transcription start site region 139053	1614 bp downstream
Tssr139054	transcription start site region 139054	1577 bp downstream
Tssr141826	transcription start site region 141826	1682 bp upstream