rs4207299 SNP Detail

Summary

• ID
  rs4207299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77157845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGTAAT TTTTTTCATT
  GGTAATCTCA GTTTTCTGGT GATTGGTATA GGAAATTCAA AGAACTGATT TCCATGTTTT
  AATTCTCTTT GTGATGGAAA GGTGAATATT TGGCTAGGAA TGCAGCTCAG TGGCTACTGT
  GACTGACTGG CATCTGTGAG GCCCTGACTC TGCCTAGCGC CACATACACC TGGTGTATGG
  M
  AGGCTGGTAT AGTGAAATTC TAGCATGGGG CGTTTGAGGC AGGAGCATCA TAAGCTCAAG
  GTCATCAGTT GTTACTGGAT AAGGTACCAA GAAGGATATT GTACGGTAGG ATCATTAATT
  ATCCCGAATT GCAAACATGC CATGCCTAAG CTGGTGAAAC GCTTGTCAGG TTTCTCTGAA
  CTCCGGCCAA TGTAAAATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6369893	mCV24105230_74588166	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss39464367	mCV24105230	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss148392303	ENSMUSSNP3095150	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4207299					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77157845 () rs orientation: forward

Symbol	Name	Function Class
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139060	transcription start site region 139060	561 bp upstream
Tssr139061	transcription start site region 139061	1484 bp upstream