rs4207300 SNP Detail

Summary

• ID
  rs4207300
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77157851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTGGCTA GGAATGCAGC TCAGTGGCTA CTGTGACTGA
  CTGGCATCTG TGAGGCCCTG ACTCTGCCTA GCGCCACATA CACCTGGTGT ATGGCAGGCT
  K
  GTATAGTGAA ATTCTAGCAT GGGGCGTTTG AGGCAGGAGC ATCATAAGCT CAAGGTCATC
  AGTTGTTACT GGATAAGGTA CCAAGAAGGA TATTGTACG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6369894	mCV24105231_74588172	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
ss39468183	mCV24105231	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
ss148392306	ENSMUSSNP5385001	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss325255222	CHEV_16_77361208	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4207300					SNP	T	T	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77157851 () rs orientation: forward

Symbol	Name	Function Class
D16Mit217	DNA Segment, Chr 16 Massachusetts Institute of Technology 217	245 bp proximal
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139060	transcription start site region 139060	555 bp upstream
Tssr139061	transcription start site region 139061	1478 bp upstream