rs4207302 SNP Detail

Summary

• ID
  rs4207302
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77157953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCTAGG AATGCAGCTC
  AGTGGCTACT GTGACTGACT GGCATCTGTG AGGCCCTGAC TCTGCCTAGC GCCACATACA
  CCTGGTGTAT GGCAGGCTGG TATAGTGAAA TTCTAGCATG GGGCGTTTGA GGCAGGAGCA
  TCATAAGCTC AAGGTCATCA GTTGTTACTG GATAAGGTAC CAAGAAGGAT ATTGTACGGT
  W
  GGATCATTAA TTATCCCGAA TTGCAAACAT GCCATGCCTA AGCTGGTGAA ACGCTTGTCA
  GGTTTCTCTG AACTCCGGCC AATGTAAAAT GCCTGAAAAT CAATTCACTT GTTACTATCA
  GACTCATTTC ACAAACAGTA TGGGAAGGAT TCATCGTCCA TGTGTATGAC TATACATGTA
  CATATATATA CATATGCACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6369896	mCV24105242_74588274	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss39420135	mCV24105242	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss148392319	ENSMUSSNP6976432	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4207302					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77157953 () rs orientation: forward

Symbol	Name	Function Class
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139060	transcription start site region 139060	453 bp upstream
Tssr139061	transcription start site region 139061	1376 bp upstream