rs4211889 SNP Detail

Summary

• ID
  rs4211889
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84571725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC GAGGAAGTTT TCAAAGACAC
  S
  GGGACGTGAT CAGAATGCAA AACTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6374537	mCV22838354_81978947	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	C
ss39475559	mCV22838354	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss148458522	ENSMUSSNP5898148	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325261869	CHEV_16_84775082	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4211889					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84571725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	within coordinates
Jam2	junction adhesion molecule 2	within coordinates
Tssr139177	transcription start site region 139177	1829 bp downstream
Tssr139178	transcription start site region 139178	1182 bp downstream
Tssr139179	transcription start site region 139179	962 bp downstream
Tssr139180	transcription start site region 139180	933 bp downstream
Tssr139181	transcription start site region 139181	744 bp downstream
Tssr139182	transcription start site region 139182	692 bp downstream
Tssr139183	transcription start site region 139183	663 bp downstream
Tssr139184	transcription start site region 139184	640 bp downstream
Tssr139185	transcription start site region 139185	599 bp downstream
Tssr139186	transcription start site region 139186	543 bp downstream
Tssr139187	transcription start site region 139187	523 bp downstream
Tssr139188	transcription start site region 139188	505 bp downstream
Tssr139189	transcription start site region 139189	414 bp downstream
Tssr139190	transcription start site region 139190	398 bp downstream