rs4212526 SNP Detail

Summary

• ID
  rs4212526
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:85599814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CGAGTTGGTG GCTCCGCACT
  S
  CTGGCTGCTG CAGGACCTAG AAGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss6375179	mCV24992800_83021450	CRAMUS	CRAMUS_MOUSE	f	SNP		C	C		C						G
ss12741224	AB001735_AN1688_1	ROCHEBIO	RPAMM	f	SNP	C			C	C	G	G	G	G	C	G	G	C	G	C	G	G
ss39477431	mCV24992800	ABI	CRAMUS_MOUSE	f	SNP		C	C		C						G
ss148467181	ENSMUSSNP3176712	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs4212526					SNP	C	C	C	C	C	G	G	G	G	C	G	G	C	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85599814 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	mRNA-UTR
Cpgi8390	CpG island 8390	within coordinates
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	908 bp proximal
Rr392078	regulatory region 392078	1256 bp downstream
Rr518655	regulatory region 518655	1568 bp distal
Rr518656	regulatory region 518656	177 bp proximal
Rr518657	regulatory region 518657	1678 bp proximal
Tssr141910	transcription start site region 141910	1642 bp upstream
Tssr141911	transcription start site region 141911	180 bp downstream
Tssr141912	transcription start site region 141912	1029 bp downstream