rs4212527 SNP Detail

Summary

• ID
  rs4212527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:85599992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCA CCTAGCTCGG AGCTGCTTTC
  Y
  AGCGAGTGCA AGGACCAGGC AGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss6375180	mCV24992811_83021628	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T
ss39446341	mCV24992811	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148467185	ENSMUSSNP4958500	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs4212527					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85599992 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	mRNA-UTR
Cpgi8390	CpG island 8390	within coordinates
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	730 bp proximal
Rr392078	regulatory region 392078	1434 bp downstream
Rr518655	regulatory region 518655	1746 bp distal
Rr518656	regulatory region 518656	within coordinates
Rr518657	regulatory region 518657	1500 bp proximal
Tssr141910	transcription start site region 141910	1820 bp upstream
Tssr141911	transcription start site region 141911	2 bp downstream
Tssr141912	transcription start site region 141912	851 bp downstream