rs4212528 SNP Detail

Summary

• ID
  rs4212528
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85600063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAG GAGCCCCTCC TTCCCCCAAC
  M
  CTGCGACACC GCCCCCTGAG CTCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss6375181	mCV24992812_83021699	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	A
ss39442320	mCV24992812	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss148467192	ENSMUSSNP777375	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs4212528					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85600063 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	62 bp upstream
Cpgi8390	CpG island 8390	within coordinates
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	659 bp proximal
Rr392078	regulatory region 392078	1505 bp downstream
Rr518655	regulatory region 518655	1817 bp distal
Rr518656	regulatory region 518656	within coordinates
Rr518657	regulatory region 518657	1429 bp proximal
Tssr141910	transcription start site region 141910	1891 bp upstream
Tssr141911	transcription start site region 141911	54 bp upstream
Tssr141912	transcription start site region 141912	780 bp downstream