rs4214385 SNP Detail

Summary

• ID
  rs4214385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:87279010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA TAGCTCTGGC TGTCCTGGAA
  Y
  TCACTTTGTA GACCAGGCTG GCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6377060	mCV22369264_84676691	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss39450274	mCV22369264	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss148490355	ENSMUSSNP4801678	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4214385					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:87279010 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cct8	chaperonin containing TCP1 subunit 8			1203 bp downstream
Usp16	ubiquitin specific peptidase 16			Intron
				Noncoding-Transcript-Variant