rs4214389 SNP Detail

Summary

• ID
  rs4214389
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:87281911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTGCAG CATTAGTGGC
  CAGTTTAATA GCCCAGTATT TTCCCAAGTA AGTATCTAAA ATACTGGCTT CTAACATATC
  CTTTACAGCA GGGACTTCAG CCTGTGAAAA CAAAATTAAT TTCTTACTCG TGAAAGCTTA
  CTTCGTGGTT TGAAGATCTT GAGCCACAGT GGCTATGGAT TCCAGAAGAT TGAATCTCCG
  W
  GTTTAAGGAA CACACCTTTA ATCTGGGCTA TGCCTTTCAT CTGGGATTAA AGGTGTGGTG
  GAACACACCT TTAATCTGGG CTACACCTGC TGGAGACAAT ATAAGGACAT TGGAAGAAGG
  GAGTCTAGCT CTTGCTCCTT CGCCTGCTTG CTGCGTGAGA CTGAGTAACT GCTAGATCCT
  TGGACTTCCA TTCACAGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss6377064	mCV22369289_84679592	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A
ss39423123	mCV22369289	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss148490387	ENSMUSSNP3200598	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs4214389					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:87281911 () rs orientation: forward

Symbol	Name	Function Class
Cct8	chaperonin containing TCP1 subunit 8	Intron
Usp16	ubiquitin specific peptidase 16	1508 bp downstream