rs4215718 SNP Detail

Summary

• ID
  rs4215718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:88626924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTAATATT TTGTTTGACA GAAAAGCAGA CACTCAGGAA
  GAAAATTCAT ATATAAGCCC TATATTGTGT CATCTTTCAT AGCTTGAGAG ATTTATATTC
  Y
  TTCATGGGCC CATTTGTTCA TGTAATTACT TCCGACATTT TGTTTTCAGT GAGGCATTCA
  ATGGAAAAGA ATTATTGGGT TCTTGTTATA TACCAAATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss6378422	mCV24727617_86033278	CRAMUS	CRAMUS_MOUSE	f	SNP		C	C					C	T
ss39418588	mCV24727617	ABI	CRAMUS_MOUSE	f	SNP		C	C					C	T
ss48328204	NES12190186	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		T	C	C		C	C		T
ss148507930	ENSMUSSNP5420085	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss325271690	CHEV_16_88830281	CHEVERUD	SCREENING_POP	f	SNP												T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs4215718					SNP	C	C	C	T	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48328204	NES12190186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:88626924 () rs orientation: forward

Symbol	Name	Function Class
Krtap15-1	keratin associated protein 15-1	192 bp downstream
Tssr139247	transcription start site region 139247	1036 bp downstream
Tssr139248	transcription start site region 139248	901 bp downstream