rs4215719 SNP Detail

Summary

• ID
  rs4215719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:88627096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA CAATTCCAGC TTAACATGGC
  R
  TGACAAGTCA ATAATGAAGA TTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6378423	mCV24727618_86033450	CRAMUS	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss39441209	mCV24727618	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss48328203	NES12190187	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		G	G	A	A		G	A	A	G		G
ss148507937	ENSMUSSNP306990	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss325271691	CHEV_16_88830453	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4215719					SNP	A	A	A	G	A	A	A	A	G	G	A	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48328203	NES12190187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:88627096 () rs orientation: forward

Symbol	Name	Function Class
Krtap15-1	keratin associated protein 15-1	364 bp downstream
Tssr139247	transcription start site region 139247	1208 bp downstream
Tssr139248	transcription start site region 139248	1073 bp downstream