rs4217144 SNP Detail

Summary

• ID
  rs4217144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89847392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA AAATCCTGTG GCTAGAGATT
  Y
  TGATATGGGT TGTGAGAGTG GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss6379857	mCV22952075_87256028	CRAMUS	CRAMUS_MOUSE	f	SNP		T	T					C
ss39452458	mCV22952075	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss48323567	NES12195636	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	C	C	T		T	T		C
ss148525563	ENSMUSSNP4958599	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss325274367	CHEV_16_90050749	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs4217144					SNP	T	T	T	C	T	T	T	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323567	NES12195636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89847392 () rs orientation: forward

Symbol	Name	Function Class
Rr328019	regulatory region 328019	within coordinates
Tiam1	T cell lymphoma invasion and metastasis 1	within coordinates
Tssr142014	transcription start site region 142014	1860 bp downstream