rs4217212 SNP Detail

Summary

• ID
  rs4217212
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90018245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAG GTCAGGGTCG TGTCGCAAGG
  S
  GGAAAGAAAG AGATGGCCTT GGACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss6379925	mCV24656280_87416991	CRAMUS	CRAMUS_MOUSE	f	SNP	C	G
ss39451141	mCV24656280	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss148526632	ENSMUSSNP1302810	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss325274623	CHEV_16_90221602	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs4217212					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90018245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	within coordinates
Rr519072	regulatory region 519072	593 bp distal
Rr519073	regulatory region 519073	within coordinates
Rr519074	regulatory region 519074	563 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139276	transcription start site region 139276	1671 bp downstream
Tssr139277	transcription start site region 139277	820 bp downstream
Tssr139278	transcription start site region 139278	768 bp downstream
Tssr139279	transcription start site region 139279	747 bp downstream
Tssr139280	transcription start site region 139280	725 bp downstream
Tssr139281	transcription start site region 139281	716 bp downstream
Tssr139282	transcription start site region 139282	632 bp downstream
Tssr139283	transcription start site region 139283	586 bp downstream