rs4217213 SNP Detail

Summary

• ID
  rs4217213
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90018315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG AGAGAGACCC GGCTGTGGGT
  K
  TTTTCTACCA CAGCGAGTTT CTGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6379926	mCV24656281_87417061	CRAMUS	CRAMUS_MOUSE	f	SNP		T					T	G
ss39436169	mCV24656281	ABI	CRAMUS_MOUSE	f	SNP		T					T	G
ss48323008	NES12186598	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T		G	T		G	T	G		T
ss148526637	ENSMUSSNP3569323	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss325274624	CHEV_16_90221672	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4217213					SNP	T	T	G	T	T	T	T	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323008	NES12186598	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90018315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	within coordinates
Rr519072	regulatory region 519072	663 bp distal
Rr519073	regulatory region 519073	within coordinates
Rr519074	regulatory region 519074	633 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139276	transcription start site region 139276	1741 bp downstream
Tssr139277	transcription start site region 139277	890 bp downstream
Tssr139278	transcription start site region 139278	838 bp downstream
Tssr139279	transcription start site region 139279	817 bp downstream
Tssr139280	transcription start site region 139280	795 bp downstream
Tssr139281	transcription start site region 139281	786 bp downstream
Tssr139282	transcription start site region 139282	702 bp downstream
Tssr139283	transcription start site region 139283	656 bp downstream