rs4217214 SNP Detail

Summary

• ID
  rs4217214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90019044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC TTGCTTGTTG GTCGGTTGCT
  Y
  TTACATTTTC TCCCTATTGC TACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6379927	mCV24656378_87417790	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss39423606	mCV24656378	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss48323006	NES12186600	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		T	T	C		T	T	C	T		C
ss325274625	CHEV_16_90222401	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4217214					SNP	C	C	C	T	C	C	C	C	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323006	NES12186600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90019044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	553 bp distal
Rr519072	regulatory region 519072	1392 bp distal
Rr519073	regulatory region 519073	96 bp distal
Rr519074	regulatory region 519074	1362 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139277	transcription start site region 139277	1619 bp downstream
Tssr139278	transcription start site region 139278	1567 bp downstream
Tssr139279	transcription start site region 139279	1546 bp downstream
Tssr139280	transcription start site region 139280	1524 bp downstream
Tssr139281	transcription start site region 139281	1515 bp downstream
Tssr139282	transcription start site region 139282	1431 bp downstream
Tssr139283	transcription start site region 139283	1385 bp downstream