rs4217374 SNP Detail

Summary

• ID
  rs4217374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90182056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAG AGGTTAAATT TGCATTAGAC
  R
  CGGGCACCTC AACAGGTCGC ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6380088	mCV24433832_87571058	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss39435515	mCV24433832	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss148529268	ENSMUSSNP3674445	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4217374					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90182056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	163 bp proximal
Gm60085	predicted gene, 60085	within coordinates
Hunk	hormonally upregulated Neu-associated kinase	845 bp upstream
Rr519117	regulatory region 519117	1868 bp distal
Rr519118	regulatory region 519118	771 bp distal
Rr519119	regulatory region 519119	39 bp distal
Rr519120	regulatory region 519120	355 bp proximal
Rr519121	regulatory region 519121	1326 bp proximal
Rr519122	regulatory region 519122	1783 bp proximal
Tssr139286	transcription start site region 139286	706 bp upstream
Tssr139287	transcription start site region 139287	734 bp upstream
Tssr139288	transcription start site region 139288	779 bp upstream
Tssr139289	transcription start site region 139289	839 bp upstream
Tssr139290	transcription start site region 139290	857 bp upstream
Tssr139291	transcription start site region 139291	1214 bp upstream