rs4217375 SNP Detail

Summary

• ID
  rs4217375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90182205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TATGTTTATT GTTTAGGTGA
  R
  ATCAGTGCAC TCACAGAGCC CGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss6380089	mCV24433822_87571207	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss39469819	mCV24433822	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148529275	ENSMUSSNP5127163	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs4217375					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90182205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	14 bp proximal
Gm60085	predicted gene, 60085	within coordinates
Hunk	hormonally upregulated Neu-associated kinase	696 bp upstream
Rr519118	regulatory region 519118	920 bp distal
Rr519119	regulatory region 519119	188 bp distal
Rr519120	regulatory region 519120	206 bp proximal
Rr519121	regulatory region 519121	1177 bp proximal
Rr519122	regulatory region 519122	1634 bp proximal
Tssr139286	transcription start site region 139286	557 bp upstream
Tssr139287	transcription start site region 139287	585 bp upstream
Tssr139288	transcription start site region 139288	630 bp upstream
Tssr139289	transcription start site region 139289	690 bp upstream
Tssr139290	transcription start site region 139290	708 bp upstream
Tssr139291	transcription start site region 139291	1065 bp upstream