rs4217567 SNP Detail

Summary

• ID
  rs4217567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90293581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CATGTCCCCT CTGCAGCCCA
  Y
  AGCCCCCTCC AGCCTCTCCT TTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6380281	mCV23413882_88582378	CRAMUS	CRAMUS_MOUSE	f	SNP		T	C						C											T
ss16382124	16.091.092	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	T	C	C	T	C	C	C	C	C	C	T	C	T	T	C	T	T	T	T	T	C	T	T	T	T	C	C	C	T	T	C	C	T	C	C	T	C	C	T	T	C	T	T	C	C
ss39484951	mCV23413882	ABI	CRAMUS_MOUSE	f	SNP		T	C						C											T
ss148531483	ENSMUSSNP4007209	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	T
ss325275150	CHEV_16_90496938	CHEVERUD	SCREENING_POP	f	SNP																										T																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4217567					SNP	T	T	C	T	C	C	T	C	C	C	C	C	C	T	C	T	T	C	T	T	T	T	T	C	T	T	T	T	C	C	C	T	T	C	C	T	C	C	T	C	C	T	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90293581 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	1103 bp proximal
Tssr139293	transcription start site region 139293	475 bp upstream
Tssr139294	transcription start site region 139294	511 bp upstream
Tssr139295	transcription start site region 139295	1804 bp upstream