rs4217569 SNP Detail

Summary

• ID
  rs4217569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90294314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT CCTGTGCAAC GTTTTGACAG
  R
  TTTTTCTTTC CTCTCTTTCT TTTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss6380283	mCV23413871_88583105	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A
ss39418090	mCV23413871	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss148531532	ENSMUSSNP3148902	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss325275161	CHEV_16_90497671	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs4217569					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90294314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hunk	hormonally upregulated Neu-associated kinase			mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Rr519144	regulatory region 519144			370 bp proximal
Tssr139293	transcription start site region 139293			226 bp downstream
Tssr139294	transcription start site region 139294			213 bp downstream
Tssr139295	transcription start site region 139295			1071 bp upstream