rs4217570 SNP Detail

Summary

• ID
  rs4217570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90294367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC CTTTTCTTTT TGGGTTGAAA
  Y
  TTGCTGAGGA TTGAACGAAC TTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss6380284	mCV23413870_88583161	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C
ss39468997	mCV23413870	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148531535	ENSMUSSNP244616	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss325275162	CHEV_16_90497724	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs4217570					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90294367 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	317 bp proximal
Tssr139293	transcription start site region 139293	279 bp downstream
Tssr139294	transcription start site region 139294	266 bp downstream
Tssr139295	transcription start site region 139295	1018 bp upstream