rs4217571 SNP Detail

Summary

• ID
  rs4217571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90295408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT GCCTCTCATT TACTGGTGGC
  R
  GGCGGCTTCC TTTGGCCTCT CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6380285	mCV23413574_88584197	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A
ss39430114	mCV23413574	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss325275170	CHEV_16_90498765	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4217571					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90295408 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	547 bp distal
Tssr139293	transcription start site region 139293	1320 bp downstream
Tssr139294	transcription start site region 139294	1307 bp downstream
Tssr139295	transcription start site region 139295	14 bp downstream