rs4217572 SNP Detail

Summary

• ID
  rs4217572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90295530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT AAGACCTGGA CTACTTAAAC
  Y
  TTAGGGAGGG ACTGACTCCC TCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss6380286	mCV23413573_88584319	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C
ss39417056	mCV23413573	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss325275171	CHEV_16_90498887	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs4217572					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90295530 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hunk	hormonally upregulated Neu-associated kinase			mRNA-UTR
				Noncoding-Transcript-Variant
Rr519144	regulatory region 519144			669 bp distal
Tssr139293	transcription start site region 139293			1442 bp downstream
Tssr139294	transcription start site region 139294			1429 bp downstream
Tssr139295	transcription start site region 139295			136 bp downstream