rs4217574 SNP Detail

Summary

• ID
  rs4217574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90295703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG AGAGCCATCC ACAGACGCTC
  Y
  CCGTATTTGA TGTGACGTGT TTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6380288	mCV23413562_88584492	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss39420620	mCV23413562	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss148531566	ENSMUSSNP5442597	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss325275174	CHEV_16_90499060	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4217574					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90295703 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	842 bp distal
Tssr139293	transcription start site region 139293	1615 bp downstream
Tssr139294	transcription start site region 139294	1602 bp downstream
Tssr139295	transcription start site region 139295	309 bp downstream