rs4217575 SNP Detail

Summary

• ID
  rs4217575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90296174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT ATTGTTTTAT TATATTTATA
  Y
  GGAAAATGTG GCTATCCTTT TGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss6380289	mCV23413561_88584963	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T
ss39439098	mCV23413561	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148531570	ENSMUSSNP6488292	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325275175	CHEV_16_90499531	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs4217575					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90296174 () rs orientation: forward

Symbol	Name	Function Class
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519144	regulatory region 519144	1313 bp distal
Tssr139295	transcription start site region 139295	780 bp downstream