rs4218814 SNP Detail

Summary

• ID
  rs4218814
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90864580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA CTGATGTCCC ACACCTTATA
  M
  CCCATTGCTA GATTACAATT TTATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6381541	mCV23756501_89149354	CRAMUS	CRAMUS_MOUSE	f	SNP			C					C		A
ss39473887	mCV23756501	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		A
ss48329827	NES12186749	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	A	C	C	A	C	C	A	C
ss148549751	ENSMUSSNP1442346	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4218814					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48329827	NES12186749	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90864580 () rs orientation: forward

Symbol	Name	Function Class
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr519269	regulatory region 519269	1191 bp proximal
Rr519270	regulatory region 519270	1443 bp proximal
Tssr142072	transcription start site region 142072	1403 bp downstream
Tssr142073	transcription start site region 142073	1434 bp downstream
Tssr142074	transcription start site region 142074	1450 bp downstream
Tssr142075	transcription start site region 142075	1474 bp downstream