rs4218817 SNP Detail

Summary

• ID
  rs4218817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90864943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT ATTTGAACCT GTGGCTTTGC
  Y
  TAGCTGTGGC TGCCAGCTAG ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6381544	mCV23756489_89149717	CRAMUS	CRAMUS_MOUSE	f	SNP		T	T				T		C
ss39439309	mCV23756489	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss48329822	NES12186754	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	C	T	T	C	T	T	C	T
ss148549766	ENSMUSSNP2101934	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4218817					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48329822	NES12186754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90864943 () rs orientation: forward

Symbol	Name	Function Class
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Tssr142072	transcription start site region 142072	1040 bp downstream
Tssr142073	transcription start site region 142073	1071 bp downstream
Tssr142074	transcription start site region 142074	1087 bp downstream
Tssr142075	transcription start site region 142075	1111 bp downstream