rs4218820 SNP Detail

Summary

• ID
  rs4218820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90865277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG TTAAAAACTT AAGAATCACT
  Y
  TTTTCACAAC ATGCAGTTTG CAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6381547	mCV23756465_89150051	CRAMUS	CRAMUS_MOUSE	f	SNP		T	T				T		C
ss39477811	mCV23756465	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss48329816	NES12186760	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	C	C	T	C	C	C	C	C
ss148549788	ENSMUSSNP3889441	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4218820					SNP	T	T	T	T	T	T	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48329816	NES12186760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90865277 () rs orientation: forward

Symbol	Name	Function Class
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr519269	regulatory region 519269	494 bp proximal
Rr519270	regulatory region 519270	746 bp proximal
Tssr142072	transcription start site region 142072	706 bp downstream
Tssr142073	transcription start site region 142073	737 bp downstream
Tssr142074	transcription start site region 142074	753 bp downstream
Tssr142075	transcription start site region 142075	777 bp downstream