rs4219189 SNP Detail

Summary

• ID
  rs4219189
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91343529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA ACCCACAGAC TATTAAGCAA
  M
  CAGTACAGTT CCTCTAGCTT TTCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6381921	mCV23253285_89623447	CRAMUS	CRAMUS_MOUSE	f	SNP	A	C	A
ss39478813	mCV23253285	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss325277495	CHEV_16_91546886	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4219189					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91343529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	within coordinates
Gm61328	predicted gene, 61328	580 bp upstream
Ifngr2	interferon gamma receptor 2	418 bp upstream
Rr325567	regulatory region 325567	within coordinates
Rr370129	regulatory region 370129	847 bp downstream
Rr370130	regulatory region 370130	437 bp downstream
Rr392125	regulatory region 392125	1456 bp upstream
Tssr139405	transcription start site region 139405	947 bp downstream
Tssr139406	transcription start site region 139406	919 bp downstream
Tssr139407	transcription start site region 139407	407 bp upstream
Tssr139408	transcription start site region 139408	591 bp upstream
Tssr139409	transcription start site region 139409	1188 bp upstream
Tssr142093	transcription start site region 142093	972 bp downstream
Tssr142094	transcription start site region 142094	1520 bp downstream
Tssr142095	transcription start site region 142095	1646 bp downstream