rs4219190 SNP Detail

Summary

• ID
  rs4219190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91344885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTATATTT TGCTGGGTTC
  TTTCCCGTGC AGAGATCATA TCAAAGCTTG GATATCTGGA GTCCACAGTG GTAGTGGGGT
  GCACCCTTGT GAAAACACAG AACTCAGGAT GAGAAAAAGG GGTCCTGAAG TTTCTGGCCG
  GCCGGGCCGG CTTGGTTTAC TCAGTGGGTC TTGCTGTTGT TGTTTATTTT GTTTTTTTTA
  W
  AGTTTGGCCA TTAGTTAAAT AAGCCTACGA ATTGGGACGT TCCCTCCCAT TGGAAGTGGT
  GTTGAGGAGT TAGTTGGTCC TCTGTCAGCA TCCCTGCAAA GGCCCTTAAG TTCCCTTTCT
  CCTTAAGGGC AGAGGAGCAC AGGAGGATGA GTGGGTTACG CAGTTAACTT GTTCTCCTGG
  AGTCAGACAA AGACTTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6381922	mCV23253280_89624786	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss39419414	mCV23253280	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4219190					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91344885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	351 bp distal
Gm61328	predicted gene, 61328	1936 bp upstream
Ifngr2	interferon gamma receptor 2	within coordinates
Rr325567	regulatory region 325567	within coordinates
Rr370130	regulatory region 370130	1793 bp downstream
Rr392125	regulatory region 392125	100 bp upstream
Tssr139407	transcription start site region 139407	883 bp downstream
Tssr139408	transcription start site region 139408	724 bp downstream
Tssr139409	transcription start site region 139409	157 bp downstream
Tssr142093	transcription start site region 142093	357 bp upstream
Tssr142094	transcription start site region 142094	164 bp downstream
Tssr142095	transcription start site region 142095	290 bp downstream
Tssr142096	transcription start site region 142096	1747 bp downstream