rs4219192 SNP Detail

Summary

• ID
  rs4219192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91345045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA CAGGAGGATG AGTGGGTTAC
  R
  CAGTTAACTT GTTCTCCTGG AGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6381924	mCV23253278_89624946	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss39476402	mCV23253278	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss148555528	ENSMUSSNP451845	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss325277498	CHEV_16_91548402	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4219192					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91345045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	511 bp distal
Ifngr2	interferon gamma receptor 2	within coordinates
Rr325567	regulatory region 325567	within coordinates
Rr370130	regulatory region 370130	1953 bp downstream
Rr392125	regulatory region 392125	within coordinates
Tssr139407	transcription start site region 139407	1043 bp downstream
Tssr139408	transcription start site region 139408	884 bp downstream
Tssr139409	transcription start site region 139409	317 bp downstream
Tssr142093	transcription start site region 142093	517 bp upstream
Tssr142094	transcription start site region 142094	4 bp downstream
Tssr142095	transcription start site region 142095	130 bp downstream
Tssr142096	transcription start site region 142096	1587 bp downstream