rs4219221 SNP Detail

Summary

• ID
  rs4219221
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91445180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACACGCCG TTTCTTTCTT CCAGTTAAGA CGGTCACCTT
  TCCCTCGTTT GGACACCCCC TACCCTCCAG CTACTCGGAG GCCCGGCGTC CACCAGGGAC
  S
  GGCCTAGTTC CCTTCCCAGC TCCTCCTCCG CCGCCGCCTT TCCCCTCCCC CTCCCCGCCT
  CCGCGCATTT CGCCGGCCGG TGTCTATGGC CGGAAAGGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss6381957	mCV25407513_89725003	CRAMUS	CRAMUS_MOUSE	f	SNP	G	C	G
ss39420178	mCV25407513	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss148555942	ENSMUSSNP4736041	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325277537	CHEV_16_91648537	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs4219221					SNP	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91445180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	within coordinates
Gart	phosphoribosylglycinamide formyltransferase	1340 bp upstream
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	433 bp downstream
Rr404967	regulatory region 404967	556 bp upstream
Son	Son DNA binding protein	within coordinates
Tssr139422	transcription start site region 139422	1186 bp downstream
Tssr139423	transcription start site region 139423	434 bp downstream
Tssr139424	transcription start site region 139424	387 bp downstream
Tssr142101	transcription start site region 142101	1332 bp upstream
Tssr142102	transcription start site region 142102	642 bp upstream
Tssr142103	transcription start site region 142103	578 bp upstream