rs4219222 SNP Detail

Summary

• ID
  rs4219222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91445781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTGTGGGT TATGTTATAA CTTAAGGAAA TATTCAGAGG
  TAAATATTTT TTACTTTTAT TTTTTAACGA ATGGTTTAAG TTGAGAACAG AGCAATACAT
  R
  AGTTAGAAAA ATCATCTGAT AAGCAGTTGT AAATTATATG CCCAAATTAC CTGGGACTGT
  GGATAGAATA ATGTTAATCA TATTTTATTG CAGAAATTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6381958	mCV25407512_89725604	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss39461020	mCV25407512	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss148555946	ENSMUSSNP4357482	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss325277538	CHEV_16_91649138	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4219222					SNP	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91445781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	499 bp distal
Gart	phosphoribosylglycinamide formyltransferase	1941 bp upstream
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	1034 bp downstream
Rr404967	regulatory region 404967	within coordinates
Son	Son DNA binding protein	within coordinates
Tssr139422	transcription start site region 139422	1787 bp downstream
Tssr139423	transcription start site region 139423	1035 bp downstream
Tssr139424	transcription start site region 139424	988 bp downstream
Tssr142101	transcription start site region 142101	1933 bp upstream
Tssr142102	transcription start site region 142102	1243 bp upstream
Tssr142103	transcription start site region 142103	1179 bp upstream