rs4219223 SNP Detail

Summary

• ID
  rs4219223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91446761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATGTGTTTT CTCTTAGTGT GGTCATTTTG TATTGTATTT TAGACATAAT AGATTATGAG
  CAGGTTTGTC CTTCAAAGTC TCAATTATTG GAACACTTTT CATAACTACA TAAATTCCTT
  TTTAGGATAT TTATTGTTGG ACAGATAAAT GGTTTAAAAT TCTAACTGCT TTTTAGTAAT
  TGTAATTAAC ATTCTGGTAG CTTTAAGGAA AATTATTTTT TATAGATTGA TTTGACTTTT
  CTTTTCTTTT CTTTTCTTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  Y
  TTTTTTTTTT TTAAAGAAAG CTCTCCCTGC CTCTGCTTCT GCTTCACAGT GCCTGAATTG
  TCCTCCTGCC CAGCCCTAGA TGACTGGAAC AAACCTCTAA TCCTAGTGCT CACAAGGCAG
  AGGCAAGAAA ATCAATCCCT GTGAGGTAGT TGGTCTACAG TAGTGAGTTC TAGGCCAGAC
  AAAGTAGAGA GACCCTATCT TAAAAAAAAA AAAAAAAAAA AGTGTAAGTG AGAGCATTAG
  AAAAACCAGC CTGGTTTATG GCATAATCAG TATAAAAACA TTTTTTTTTA ATTTGCCATT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss6381959	mCV25407506_89726586	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C
ss39449859	mCV25407506	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs4219223					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91446761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	1479 bp distal
Gm36712	predicted gene, 36712	1895 bp upstream
Rr325570	regulatory region 325570	160 bp distal
Rr404967	regulatory region 404967	724 bp downstream
Son	Son DNA binding protein	within coordinates
Tssr139424	transcription start site region 139424	1968 bp downstream
Tssr139425	transcription start site region 139425	1805 bp upstream
Tssr139426	transcription start site region 139426	1873 bp upstream