rs4219225 SNP Detail

Summary

• ID
  rs4219225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91449836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTACTGG TTTTAAACCA CATTACATTT TGTTTTAAAG
  CCCATGCTTA AAAGTTGACT TGTTTGTACA AAGCAGGTTG AGGCACTTTC GTTGTATACA
  R
  TTTCTTTTTT GGAATTGATT AAATAATGGG TGATTAAAAA TGAAGAATCT GTGGTTAATC
  ACAAGACTAA ATTATTAAGT ATAGGAGTTA GGTATATAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss6381961	mCV25407499_89729660	CRAMUS	CRAMUS_MOUSE	f	SNP		A	G			A	G
ss39447698	mCV25407499	ABI	CRAMUS_MOUSE	f	SNP		A	G			A	G
ss48333147	NES12276038	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G			G		A	G		A
ss148555958	ENSMUSSNP2742400	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
ss325277540	CHEV_16_91653193	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs4219225					SNP	G	A	G	G	G	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48333147	NES12276038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91449836 () rs orientation: forward

Symbol	Name	Function Class
Gm36712	predicted gene, 36712	within coordinates
Son	Son DNA binding protein	within coordinates
Tssr139425	transcription start site region 139425	1248 bp downstream
Tssr139426	transcription start site region 139426	1171 bp downstream
Tssr139427	transcription start site region 139427	1673 bp upstream