rs4219226 SNP Detail

Summary

• ID
  rs4219226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91449994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCACAAGAC TAAATTATTA AGTATAGGAG TTAGGTATAT
  AGTATGGTTC ATAAGACAGT TTAAAATAAC AACTAGTCTG GCTTAGATCA TGTCTGGTTA
  R
  GTATAAACTA CCTTTTCATG CTGTGAAATA AGCATTAAAA ATTGATTGAT TTTCTTTTGG
  TATGATGCCA TGTTGGTGTT GGTGTTTTTT CTCTATAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6381962	mCV25407498_89729818	CRAMUS	CRAMUS_MOUSE	f	SNP		G	A					G	A
ss39479811	mCV25407498	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	A
ss48333146	NES12276040	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		A	G		G	G	A	G		G
ss148555963	ENSMUSSNP1044753	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss325277541	CHEV_16_91653351	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4219226					SNP	G	G	A	G	A	G	A	G	A	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48333146	NES12276040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91449994 () rs orientation: forward

Symbol	Name	Function Class
Gm36712	predicted gene, 36712	within coordinates
Son	Son DNA binding protein	within coordinates
Tssr139425	transcription start site region 139425	1406 bp downstream
Tssr139426	transcription start site region 139426	1329 bp downstream
Tssr139427	transcription start site region 139427	1515 bp upstream