rs4219227 SNP Detail

Summary

• ID
  rs4219227
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91450177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG GTAAATTTTA CTGTGCGGTT
  K
  TAAGATAGTG TAAACTGTCT TATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss6381963	mCV25407323_89730001	CRAMUS	CRAMUS_MOUSE	f	SNP		T	G				T
ss39462750	mCV25407323	ABI	CRAMUS_MOUSE	f	SNP		T	G				T
ss48333145	NES12276043	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	G		G	G		G	T	G		G
ss148555966	ENSMUSSNP3075024	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss325277542	CHEV_16_91653534	CHEVERUD	SCREENING_POP	f	SNP										T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs4219227					SNP	T	T	G	T	T	G	T	G	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48333145	NES12276043	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91450177 () rs orientation: forward

Symbol	Name	Function Class
Gm36712	predicted gene, 36712	within coordinates
Son	Son DNA binding protein	within coordinates
Tssr139425	transcription start site region 139425	1589 bp downstream
Tssr139426	transcription start site region 139426	1512 bp downstream
Tssr139427	transcription start site region 139427	1332 bp upstream