About   Help   FAQ
rs4219876 SNP Detail
Summary
  • ID
    rs4219876
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr16:92471432 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AGTCT GTTGCCTGAT GGGAGACCCC
    R
    CTTTCCCAGA AACCCTGGCT GGCCA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss6382622 mCV23169765_90756419 CRAMUS CRAMUS_MOUSE f SNP A G A
ss39486284 mCV23169765 ABI CRAMUS_MOUSE f SNP A G A
ss148562067 ENSMUSSNP4084173 ENSEMBL ENSEMBL_Sanger f SNP A A
ss325278204 CHEV_16_92674789 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs4219876 SNP A G A G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:92471432 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D16Mit52 DNA segment, Chr 16, Massachusetts Institute of Technology 52 1830 bp proximal
Rr328209 regulatory region 328209 within coordinates
Runx1 runt related transcription factor 1 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory