rs4219877 SNP Detail

Summary

• ID
  rs4219877
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92472683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC TATCCCCACC CCCCACCCCC
  M
  GTTCTCAGTG GCTCCGTAAC TCTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6382623	mCV23169764_90757670	CRAMUS	CRAMUS_MOUSE	f	SNP		A	C	A
ss39424950	mCV23169764	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A
ss148562072	ENSMUSSNP5705698	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
ss325278205	CHEV_16_92676040	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4219877					SNP	C	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92472683 () rs orientation: forward

Symbol	Name	Function Class
D16Mit52	DNA segment, Chr 16, Massachusetts Institute of Technology 52	579 bp proximal
Rr328209	regulatory region 328209	within coordinates
Runx1	runt related transcription factor 1	within coordinates
Tssr142142	transcription start site region 142142	1673 bp downstream