rs4220188 SNP Detail

Summary

• ID
  rs4220188
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93612720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT TATCCAAGGG GAAATTTTTT
  W
  AAAAGGCATC ACAAAGAAGA TGTGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6382958	mCV25393044_91904021	CRAMUS	CRAMUS_MOUSE	f	SNP	A	T	A
ss39465596	mCV25393044	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss148573930	ENSMUSSNP706583	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss325280260	CHEV_16_93816077	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4220188					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93612720 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	80 bp proximal
Rr370142	regulatory region 370142	559 bp upstream
Tssr142206	transcription start site region 142206	556 bp downstream