rs4220189 SNP Detail

Summary

• ID
  rs4220189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93612762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT GTGCATGCAG ATGTTCCCTG
  Y
  GGCAAAGGCC TGAAGGGTGG CGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6382959	mCV25393037_91904063	CRAMUS	CRAMUS_MOUSE	f	SNP		T				C		T
ss39424807	mCV25393037	ABI	CRAMUS_MOUSE	f	SNP		T				C		T
ss60510885	NES16531468	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C		C	T	T	T		T	T	T		C
ss148573935	ENSMUSSNP1363472	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss325280261	CHEV_16_93816119	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4220189					SNP	T	T	T	T	C	C	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60510885	NES16531468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93612762 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	38 bp proximal
Rr370142	regulatory region 370142	517 bp upstream
Tssr142206	transcription start site region 142206	514 bp downstream