rs4220488 SNP Detail

Summary

• ID
  rs4220488
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:94224706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC CTGAGGGCGC TCTGCCTTCC
  S
  TAAGTCCTTT CAATCCTGAA GGAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6383278	mCV24839480_92511166	CRAMUS	CRAMUS_MOUSE	f	SNP		C	G				G	G
ss39470937	mCV24839480	ABI	CRAMUS_MOUSE	f	SNP		C	G				G	G
ss60515598	NES16523057	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G		G	C	C		G	C	G	G		C
ss148579408	ENSMUSSNP2744534	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
ss325281205	CHEV_16_94645454	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4220488					SNP	C	C	G	G	G	G	G	G	C	C	C	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515598	NES16523057	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94224706 () rs orientation: forward

Symbol	Name	Function Class
Tssr139547	transcription start site region 139547	1236 bp upstream
Ttc3	tetratricopeptide repeat domain 3	Intron