rs4220489 SNP Detail

Summary

• ID
  rs4220489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94224708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT GAGGGCGCTC TGCCTTCCGT
  W
  AGTCCTTTCA ATCCTGAAGG AGATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6383279	mCV24839481_92511168	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss39474082	mCV24839481	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss148579414	ENSMUSSNP3861011	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss325281206	CHEV_16_94645456	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4220489					SNP	T	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94224708 () rs orientation: forward

Symbol	Name	Function Class
Tssr139547	transcription start site region 139547	1234 bp upstream
Ttc3	tetratricopeptide repeat domain 3	within coordinates