rs4220496 SNP Detail

Summary

• ID
  rs4220496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94227127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA GTGTCTGGTA AAGATTATTT
  Y
  ATAAAACTGA CAAGACATGG CTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6383286	mCV24839776_92513609	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss39446873	mCV24839776	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148579462	ENSMUSSNP4214612	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss325281219	CHEV_16_94647875	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4220496					SNP	C	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94227127 () rs orientation: forward

Symbol	Name	Function Class
Tssr139547	transcription start site region 139547	1161 bp downstream
Tssr139548	transcription start site region 139548	71 bp downstream
Ttc3	tetratricopeptide repeat domain 3	within coordinates